Flatsonar

OME Rewriter

by Matthias Klumpp

View and rewrite OME-TIFF metadata

Broad permissions Verified creator LGPL-3.0-or-later v0.1.1
Install Source code
Screenshot 1 of OME Rewriter

About

OME Rewriter is a tool for editing metadata fields in 4D OME-TIFF files. It can also rewrite plain TIFF files into standards-compliant OME-TIFF files with rich microscope metadata.

Features include:

  • Open and inspect OME-TIFF files, including multi-channel Z-stack images
  • Edit physical voxel sizes, numerical aperture, lens immersion medium, and embedding medium
  • Edit per-channel parameters: microscope type, excitation/emission wavelengths, and pinhole size
  • Deinterleave raw TIFF files as standards-compliant OME-TIFF files
  • Save and reload parameter sets for quick re-use across acquisitions

Permissions

1 permission weaken the sandbox. Flatsonar asks before installing.

  • full access to your home folder
    --filesystem=home
  • inter-process communication (needed for X11)
    --share=ipc
  • X11 display, only when Wayland is unavailable
    --socket=fallback-x11
  • Wayland display
    --socket=wayland
  • GPU acceleration
    --device=dri
  • access to xdg-config/kdeglobals
    --filesystem=xdg-config/kdeglobals:ro
  • access to /run/media
    --filesystem=/run/media
  • access to /srv
    --filesystem=/srv
  • access to /mnt
    --filesystem=/mnt
  • talks to com.canonical.AppMenu.Registrar
    --talk-name=com.canonical.AppMenu.Registrar
  • talks to org.kde.kconfig.notify
    --talk-name=org.kde.kconfig.notify
  • talks to org.kde.KGlobalSettings
    --talk-name=org.kde.KGlobalSettings

Who publishes this

The creator demonstrably controls this app id: Flathub verification, the hosting account owns the namespace, or a well-known file on their domain.

  • verified on Flathub: the developer proved they control this app id
    publisher:flathub

Maintenance

Recent activity on the upstream repository, or built and reviewed by Flathub.

No staleness signals: recent activity, or built and reviewed by Flathub.