Coot
by Paul Emsley
Macromolecular model builder
About
Coot is a powerful macromolecular model-building tool for analysing X-ray data and models (i.e. proteins, ligands, RNA and DNA). There are many tools for model manipulation and building, such as minimization, molecular superposition, fragment rotation/translations, rotamer-fitting, de novo building and refinement.
Coot is used by scientists using X-ray crystallography or cryo-EM for analysis of proteins, electron density maps, protein interactions and drug design.
Permissions
2 permissions weaken the sandbox. Flatsonar asks before installing.
- X11 display: X11 lets apps read input and windows of other apps
--socket=x11 - full access to your home folder
--filesystem=home - inter-process communication (needed for X11)
--share=ipc - network
--share=network - audio
--socket=pulseaudio - GPU acceleration
--device=dri
Who publishes this
On Flathub: the manifest was reviewed and built on Flathub's infrastructure, but the developer has not verified ownership of the app id.
- fetches from www.bmsc.washington.edu over unencrypted http: anyone on the path can swap the bytes
source:insecure-url - on Flathub: manifest reviewed and built by Flathub; the developer has not verified the app id
publisher:flathub
Maintenance
Recent activity on the upstream repository, or built and reviewed by Flathub.
No staleness signals: recent activity, or built and reviewed by Flathub.