Python Molecular Graphics
by Schrödinger, Inc.
Molecular visualization and raytracing
About
PyMOL is one of a few open-source visualization tools available for use in structural biology. The Py portion of the software's name refers to the fact that it extends, and is extensible by the Python programming language.
PyMOL has the ability to load, manipulate and visualize molecules from a variety of formats and sources. The program can easily be controlled using a menu-driven GUI, or from a large number of commands and/or scripts. A built-in raytracer is available to generate high-quality images of the views generated in the GL portion of the GUI.
PyMOL uses OpenGL Extension Wrangler Library (GLEW) and Freeglut, and can solve Poisson–Boltzmann equations using the Adaptive Poisson Boltzmann Solver (apbs).
Install this application to view, analyze, and prepare graphics images of proteins and experimental strucural data (e.g. crystallographic, NMR and electron microscopy based).
Permissions
1 permission weaken the sandbox. Flatsonar asks before installing.
- X11 display: X11 lets apps read input and windows of other apps
--socket=x11 - inter-process communication (needed for X11)
--share=ipc - network
--share=network - GPU acceleration
--device=dri - access to xdg-config/kdeglobals
--filesystem=xdg-config/kdeglobals:ro - talks to com.canonical.AppMenu.Registrar
--talk-name=com.canonical.AppMenu.Registrar - talks to org.kde.kconfig.notify
--talk-name=org.kde.kconfig.notify - talks to org.kde.KGlobalSettings
--talk-name=org.kde.KGlobalSettings
Who publishes this
On Flathub: the manifest was reviewed and built on Flathub's infrastructure, but the developer has not verified ownership of the app id.
- on Flathub: manifest reviewed and built by Flathub; the developer has not verified the app id
publisher:flathub
Maintenance
Recent activity on the upstream repository, or built and reviewed by Flathub.
No staleness signals: recent activity, or built and reviewed by Flathub.